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[X-plor] generate.inp including DNA

Kristina Lakomek via x-plor%40net.bio.net (by klakome At gwdg.de)
Wed Dec 20 11:49:10 EST 2006


Dear all,

I would like to refine the structure of a protein-DNA complex with CNS. While
editing the generate.inp - file, I have to define "those residues which need
to have the patch applied to make them DNA". Does anyone know which
nomenclature I have to use? The problem why my job ended up with an error
message could be, that I have two chains (E and F) in my pdb file each with
residues 1 to 12. What do I have to type in the box in order to get really DNA
and not the O2` atoms of RNA?
Thank  you very much in advance.
 
Best regards,
   Kristina



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