[Staden] Solving transposon problems on genome assembly

Duarte Molha pepetide at hotmail.com
Tue May 16 23:05:03 EST 2006


I am working on the sequencing of a microorganism and altough the main  
sequencing has been completed I am having problems due to the existence of  
many repeats (transposon regions).
This makes my genome assembly very difficult and produces many contigs.

Does anyone know if there is there anyway of improving this with the  
staden package?

Best Regards


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