Scripting in Staden 2001

jkb at mrc-lmb.cam.ac.uk jkb at mrc-lmb.cam.ac.uk
Fri Jan 18 06:52:03 EST 2002

In <3C46D6AA.1C34FEF3 at bbsrc.ac.uk> Simon Andrews <simon.andrews at bbsrc.ac.uk> writes:

> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
> Processing        2 in batch
> File name G10P630536FE3.T0.exp
> Reading length    587
> Thu 17 Jan 13:44:30 2002 Error: Error in FNDCON: illegal consensus
> header

(Guilty look)

Indeed. We detected (or rather were made aware of) this bug a couple of days
ago. It'll work if you change the database name to be 9 characters or less.
We've rebuilt the libgap.so for some, but not yet all, of our supported
platforms (Alpha, Solaris and Linux so far). The new versions can be download
from ftp://ftp.mrc-lmb.cam.ac.uk/pub/staden/patches/2001.0/.

Apologies for this bug; it was created when increasing the absolute maximum
number of sequences in a database from 99,999 to 99,999,999.

James Bonfield (jkb at mrc-lmb.cam.ac.uk)   Fax: (+44) 01223 213556
Medical Research Council - Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, England.
Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/

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