IUBio

original positions in reads

jkb at mrc-lmb.cam.ac.uk jkb at mrc-lmb.cam.ac.uk
Mon Jul 23 11:53:22 EST 2001


In <3B5714EB.B70368D4 at genome.wi.mit.edu> major at genome.wi.mit.edu (major) writes:

> info with the edits that have been made while creating the gapDB.  I can
> access the positional info for each read, but get this type of array
> returned:
> _____________________--
> 2 5 2 4 2 3 2 2 2 1 2 0 1 -1 1 -2 1 -3 1 -4 1 -5 1 -6 1 -7 1 -8 1 -9 1

Note that the original positions are 16-bit values (and they ought to be
32-bit, but history makes that harder). It looks like you've read them as
8-bit values.

James
--
James Bonfield (jkb at mrc-lmb.cam.ac.uk)   Tel: 01223 402499   Fax: 01223 213556
Medical Research Council - Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, England.
Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/




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