Again, I may have missed the relevant portion of the manual (in which case
I apologise), but is there a way to order the contigs (based on paired
reads from the same template) _automatically_? Also, having sorted them
into some kind of order, I'd really like a visual display of the order
showing coverage across the whole cosmid (sequenced versus not sequenced).
Am I making sense? Is this possible?
( Andy.Law at bbsrc.ac.uk )
( Big Nose in Edinburgh )