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Help w/ a first time sequence analysis

Bob Findlay bob.findlay at bbsrc.ac.uk
Wed Mar 15 06:57:47 EST 1995

>We have recently purchased and installed the the Staden package.  After reading
>the manual several times over, we have a good understanding of the components
>of the program.  What we cannot seem to find after reading is how to take
>a single sequence file(s) from an ABI 373 move it into the the package and
>perform a simple manipulation.  Can anybody provide us w/ help on this matter?   

these are the stages that our users go through to get a sequence from ABI
to staden.

makeSCF - Converts trace data to compressed format (reduces it to 30% of it's
          original size).
ted     - Trace editor.  Allows you to remove poor quality data from either end
          of your sequence.
vep     - Vector excision program - remove vector sequence.
xbap    - The main staden sequence assembly program
Bob Findlay
Mail:  John Innes Centre, Colney Lane, Norwich, Norfolk, NR4 7UH
EMail: bob.findlay at bbsrc.ac.uk

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