I have seen that many people are interested in Secondary Structure
also interested in the surface of proteins.
I therefore want to bring your attention to a paper I have recently
published, which has the title: A generic method for assignment of
reliability scores applied to solvent accessibility predictions.,
which is freely available here: http://www.biomedcentral.com/1472-6807/9/51
It describes a new method, which is implemented in our freely
available method: NetSurfP:
Basically it predicts the secondary structure of a protein, its
surface accessibility and also the reliability of surface
accessibility prediction in form of a z-score :-)
I hope you will find it useful in your research :-)
Bent Petersen, Ph.D Student, M.Sc.
Center for Biological Sequence Analysis - CBS
Department of Systems Biology,
Technical University of Denmark.
Bld. 208, DK-2800 Lyngby, Denmark