Herbert Axelrod wrote:
>> Dear Molecular Graphics Community,
> I would be grateful if someone could recommend software
> for visualizing the docking interface between two proteins.
> We are working on the co-crystal structure of an electron
> transfer complex, and I would like to get some input on
> what programs are being used to display protein-protein
> binding interfaces.
If you are just talking about visualising the interface and not docking
two proteins together in the first place then the Deep View program can
do this (www.expasy.ch/spdbv/). It can calculate a contact surface
between two (or more) docked structures, and will allow you to view a
variety of molecular interactions. It also has the added bonuses of
being free, and available on pretty much whatever platform you like.
Hope this helps