> I am studying the interaction of a protein enzyme with a protein substrate.
> From mutation studies, I know roughly which region of the enzyme interacts
> with which region of the substrate. Can someone recommend a program to
> predict the docking of these 2 proteins? It would be best if the results
> can be visualized graphically. Thanks
Look in J. Comp. Chem. for papers on Molecular Silverware by
folks at Rohm & Haas.