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--=3E
Panseq (http=3A//76=2E70=2E11=2E198/claing/panseq/panseq=5Fhome=2Ecgi)
- a group of tools=2C developed by Chad Laing (Public Health Agency of C=
anada) =A0for
the analysis of the =27pan genome=27 of a group of genomic sequences=2E =
The
pan-genome of a bacterial species consists of a core genome and an acces=
sory
gene pool=2C the latter of which allows subpopulations of the organism t=
o adapt
to specific environments=2E These include =93Novel Region Finder=94=2C w=
hich will find
sequences that are unique to a strain or group of strains with respect t=
o
another strain or group of strains=2E =93Core/Accessory Genome Analysis=94=
will
define the core and accessory genome of a group of strains=2C based on t=
he user
configurable parameters of region size and percent sequence identity=2E =
Outputs
of this feature include concatenated core genomes for each sequence exam=
ined=2C a
tab-delimited table depicting the presence / absence of each accessory r=
egion
among all the sequences examined=2C a tab-delimited table depicting each=
SNP
among all the sequences examined and NEXUS format files of both the core=
and
accessory genome=2E =93Loci Selector=94 determines the most variable and=
discriminatory loci from a group=2E=A0
=A0
This site can also
be accessed at=3A http//molbiol-tools=2Eca/Genomics=2Ehtm
Andrew M=2E Kropinski
Research Scientist =26 Program Lead=2C Host =26 Pathogen Determinants=2C=
Laboratory for Foodborne Zoonoses
Adjunct Professor =2C Microbiology =26 Immunology=2C Queen=27s Universit=
y
Adjunct Professor=2C Molecular =26 Cellular Biology=2C University of Gue=
lph
URL=3A Online Analysis Tools (http=3A//molbiol-tools=2Eca)