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short patterns

Jacob Hofma-Bang jhb at ssi.dk
Tue May 21 03:29:13 EST 2002

tala at kfshrc.edu.sa (bakheet) wrote in
news:97b1b3d5.0205060305.36c7eea3 at posting.google.com: 

> Hello Everybody,
>  I am writing to you to seek your help in solving my problem.  I have
>  two 
> sets of sequences each is 77 sequences (ranging from 40 b.p to 5000
> b.p.), and I am trying to find out a short pattern that is found in set
> 1 but not in set 2 (or the other way) .  Does HMMR  do the job ? If not
> which program can help knowing that  I am getting errors if I  align
> them. Could you please help in solving this problem.
> Thanks,


Try using the old Windows 3.11 program Macaw. It will show you a match in 
all of your sequences. So you just have to compare set1 to set 2.


Jacob Hofman-Bang

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