tala at kfshrc.edu.sa (bakheet) wrote in
news:97b1b3d5.0205060305.36c7eea3 at posting.google.com:
> Hello Everybody,
> I am writing to you to seek your help in solving my problem. I have
> sets of sequences each is 77 sequences (ranging from 40 b.p to 5000
> b.p.), and I am trying to find out a short pattern that is found in set
> 1 but not in set 2 (or the other way) . Does HMMR do the job ? If not
> which program can help knowing that I am getting errors if I align
> them. Could you please help in solving this problem.
Try using the old Windows 3.11 program Macaw. It will show you a match in
all of your sequences. So you just have to compare set1 to set 2.