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Granting personal databases to other Unix users

Robert.Godemann at evotecoai.com Robert.Godemann at evotecoai.com
Thu Mar 7 10:35:29 EST 2002


Dear Nick,

thanks for pointing me to the right configuration files.
I will try the newdblogicals and newdbfiles command after initialising with
the gcgsupport command and editing the dblogicals and dbnames.map file.

cheers
Robert



Dr. Robert Godemann
Evotec OAI AG/EVOTEC NeuroSciences GmbH
Schnackenburgallee 114
22525 Hamburg
email:     robert.godemann at evotecoai.com
phone:   +49-40-56081- 299
Fax:       +49-40-56081- 222
http://www.evotecoai.com/


                                                                                                               
                    "Staffa.Nick"                                                                              
                    <staffa at niehs.       To:     "'Robert.Godemann at evotecoai.com'"                             
                    nih.gov>              <Robert.Godemann at evotecoai.com>, info-gcg at hgmp.mrc.ac.uk             
                                         cc:                                                                   
                    03/06/2002           Subject:     RE: Granting personal databases to other Unix users      
                    03:21 PM                                                                                   
                                                                                                               
                                                                                                               




I have done this.
I think you must make your new database look like genbank or pir.
That is, with entries in dbnames.map et c.
Here is what I see on my system for my ma15k database
(I also have a blast database for it):
alfred>/opt/gcg/gcg10 >sea "ma15k"
ma15k           n       MicroArray 15K set
./gcgcore/data/rundata/blast.sdbs
ma15k
./gcgdbconfigure/dbconfigfiles/gendata.fil
ma15k   ma15kdir:ma15k
ma15K   ma15kdir:ma15k
./gcgdbconfigure/dbconfigfiles/dblognames

AND somewhere you must define the logical name for (e.g.) ma15k




Nick Staffa
Telephone: 919-316-4569  (NIEHS: 6-4569)
Scientific Computing Support Group
NIEHS Information Technology Support Services Contract
National Institute of Environmental Health Sciences
Research Triangle Park, North Carolina
Debra Parrish, DIR monitor.



-----Original Message-----
From: Robert.Godemann at evotecoai.com
[mailto:Robert.Godemann at evotecoai.com]
Sent: Wednesday, March 06, 2002 8:44 AM
To: info-gcg at hgmp.mrc.ac.uk
Subject: Granting personal databases to other Unix users


Dear all,

we have GCG 10.2  running under IRIX 6.5.
I created several personal sequence databases with the dataset command
which I now want to make available for other Unix users using GCG.
Does anyone know how to do this?

cheers
Robert



Dr. Robert Godemann
Evotec OAI AG/EVOTEC NeuroSciences GmbH
Schnackenburgallee 114
22525 Hamburg
email:     robert.godemann at evotecoai.com
phone:   +49-40-56081- 299
Fax:       +49-40-56081- 222
http://www.evotecoai.com/

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