PAUP in GCG seqlab

[Steve Thompson]

Hi Mike -

The 0-1 data is known as "mask" data and needs to be encoded as
such.  This is impossible in msf format but can be done in rsf format.  My
recommendation is to use GCG's SeqLab for the entire analysis and your
problems will go away.  SeqLab does require an X graphics interface, but
it is definitely worth it.  See my Mol Evol workshop tutorial at:

http://bio.fsu.edu/~stevet/MolEvol.pdf

The data files to run the tutorial are available in:

http://bio.fsu.edu/~stevet/Data_Files

				Cheers - Steve
						Steven M. Thompson
				A C T G		stevet at bio.fsu.edu
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