I am trying to use PAUPsearch with an msf file that contains nucleotide
and 0-1 data. The 0-1 data encodes significant gap/indel presence or
absence. This type of file runs OK in PHYLIP analyses but I'm
struggling to get the data into PAUPsearch. The program just crashes
with an 'not a GCG file' type of message. If I remove the 0-1 data it
runs OK. Any suggestions of how to proceed, please? I don't have access
to PAUP outside of GCG.