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binding motifs?

Mario Garcia mario at PINAR1.CSIC.ES
Fri Jun 25 06:01:54 EST 1999


>>Dear All,
>>Could anyone let me know where I can find a data resource regarding
>>DNA sequence motifs recognized by proteins for binding?
>>Thank you so much in advance.
>>Regards,
>>
>>---------------------------------------------------------------------------
>>    Dr. Mario Garcia de Lacoba          Phone   : +341 915611800 (ext.4334)
>>                                        Fax     : +341 915627518
>>Centro de Investigaciones Biologicas    E-mail  : mario at pinar1.csic.es
>>              C.S.I.C.
>>          c/ Velazquez, 144                  PROTEIN MODELING UNIT
>>         28006-Madrid. SPAIN.      
>>---------------------------------------------------------------------------
>>
>>
>>
>Try the PROSITE database of amino acid sequence motifs.  
>
>http://helix.nih.gov/science/prosite.html
>
>Joe White
>
>**************************************************
>**      Joseph White                            **
>**      Assistant Professor for Research        **
>**      Michigan State University               **
>**                                              **
>** e-mail:      whitejo at pilot.msu.edu           **
>** phone:       (517) 353-1999                  **
>** address:     219 Biochemistry                **
>**              Michigan State University       **
>**              East Lansing, MI  48824         **
>**************************************************

Dear Joseph,
First all, thank you very much for your reply. Really, what I would need to
do is to find putative motifs for protein binding (for any class of proteins!)
in one of my DNA sequences. Therefore, I am trying to find a database
containing all the known DNA sequence motifs by protein binding. Could you
know of such database? Thanks a million for your time and help.
Kind regards,
		Mario

---------------------------------------------------------------------------
    Dr. Mario Garcia de Lacoba          Phone   : +341 915611800 (ext.4334)
                                        Fax     : +341 915627518
Centro de Investigaciones Biologicas    E-mail  : mario at pinar1.csic.es
              C.S.I.C.
          c/ Velazquez, 144                  PROTEIN MODELING UNIT
         28006-Madrid. SPAIN.      
---------------------------------------------------------------------------




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