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DATASET and Sanger sequences

Paul Roy proy at rsvs.ulaval.ca
Thu Oct 29 16:15:29 EST 1998


Hi GCGers:
     I may have asked this before and forgotten the response.  What to do
about sequences from the Sanger center, where doing FROMFASTA gives names
like "contig999.1.seq" and DATASET gives "contig999.1" which is not
recognized by e.g. FASTA, as a valid database file name and the alignment
is thus not presented.  Since I do not have system privilege, is there a
way to define local logical names (we have the Unix version and I was more
familiar with DCL) and use FASTATOGCG instead?  Or will this give the same
results?

Thanks,

Paul

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 Paul H. Roy                             Phone:  +1 418 654 2705
 Departement de biochimie,FSG            FAX:    +1 418 654 2715
 Universite Laval                        E-mail: proy at rsvs.ulaval.ca
 Quebec, QC  G1K 7P4
 CANADA

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