partial sequence length extraction

Andy Law Andy.Law at bbsrc.ac.uk
Mon Jun 29 03:32:04 EST 1998

In article <m.mitchell-ya02408000R2606981353390001 at news.lif.icnet.uk>,
m.mitchell at icrf.icnet.uk (Mike Mitchell) wrote:

 >  We would like to abstract portions of a large number of sequences from the
 >  databases, but have ground to a halt. We have made a list file that lists
 >  each database entry and the sequence range (using begin:aaa   end:bbb).
 >  However if we fetch @list the full length sequence is retrieved.
 >  We know that list is working normally with pileup (for example), so can we
 >  retrieve (or create) partial sequences with GCG tools?
 >  If it is not possible with GCG, can it be done with SRS or similar tool?

Does the GCG program ASSEMBLE allow you to do this from database entries?

Andy Law
( Andy.Law at bbsrc.ac.uk )
( Big Nose in Edinburgh )

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