In article <m.mitchell-ya02408000R2606981353390001 at news.lif.icnet.uk>,
m.mitchell at icrf.icnet.uk (Mike Mitchell) wrote:
> We would like to abstract portions of a large number of sequences from the
> databases, but have ground to a halt. We have made a list file that lists
> each database entry and the sequence range (using begin:aaa end:bbb).
> However if we fetch @list the full length sequence is retrieved.
>
> We know that list is working normally with pileup (for example), so can we
> retrieve (or create) partial sequences with GCG tools?
>
> If it is not possible with GCG, can it be done with SRS or similar tool?
Does the GCG program ASSEMBLE allow you to do this from database entries?
Andy Law
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( Andy.Law at bbsrc.ac.uk )
( Big Nose in Edinburgh )
