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partial sequence length extraction

Mike Mitchell m.mitchell at icrf.icnet.uk
Fri Jun 26 07:53:39 EST 1998


We would like to abstract portions of a large number of sequences from the
databases, but have ground to a halt. We have made a list file that lists
each database entry and the sequence range (using begin:aaa   end:bbb).
However if we fetch @list the full length sequence is retrieved.

We know that list is working normally with pileup (for example), so can we
retrieve (or create) partial sequences with GCG tools?

If it is not possible with GCG, can it be done with SRS or similar tool?


Thanx.

-- 
Michael Mitchell                 "Smoke me a kipper,
User Support                  I'll be back for breakfast."
Molecular Biology Software      Ace Rimmer, Test Pilot
+44 (0)171 269 3115                BBC-TV Red Dwarf           ENFJ



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