Thomas Burmeister wrote:
> Dear Newsgroup-readers & GCG-users!
> I want to align sequences, appr. 10-15 kB in length. As I understand it,
> the GCG program PILEUP only supports alignments of sequences <= 7 kB. Is
> there a possibility to circumvent this restriction?
Though undocumented, there are three additional
versions of PileUp shipped with the GCG package that
can be accessed and run just like the original:
Command: Limits:
------------ -----------------------------------------------
pileup 5000 residues, 2000 gaps = 7000 total
pileup_10000 10000 residues, 4000 gaps = 14000 total
pileup_15000 15000 residues, 6000 gaps = 21000 total
pileup_20000 20000 residues, 8000 gaps = 28000 total
The versions with higher limits do require more memory to
run, and so I do not recommend making them the default versions.
Regards,
Lynn Miller, Technical Support Coordinator
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