> Some users of mine have found that GCG MSF files as output by clustalw
> 1.74 do not work well with pretty from GCG 9.1. This is because the
> weight values output by clustalw are very small. Thus I have created
> this tiny patch to clustalw 1.74 to scale up all the weights it
> outputs in GCG files by a factor of 100.
I had the same trouble. Can you tell me more specifically how did you
create the "tiny patch" to clustalw 1.74 ? Thanks