Howdy Folks:
Is it possible to obtain a "consensus" sequence to a group of aligned
nucleic acid sequences, such that the consensus contains ambiguity codes
reflecting the pileup, rather than lower-case majority residues, or gap
characters?
I'm thinking of situations where one was designing pcr primers to a group
of related sequences.
I'm sure there's some obvious way which I'm missing.
Cheers,
Ken.
