Hello,
I've encountered an interesting phenomenon in GCG v. 9.0, UNIX.
Try the following:
gap -in1=sw:lyg_ansan -in2=sw:kad3_bovin -gap=5 -len=3 -out=out1.pair
gap -in1=sw:kad3_bovin -in2=sw:lyg_ansan -gap=5 -len=3 -out=out2.pair
Now look at the results in files out1.pair and out2.pair
Seems like the results are dependent upon sequence order. AFAIK, that
shouldn't be the case in pairwise sequence alignment.
Can anyone please shed some light on the matter? Please email me
personally as well as to this newsgroup.
Many thanks,
Iddo
--
Iddo Friedberg ("\''/").___..--''"`-._
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