findpatterns of proteins in ESTs

Stuart M. Brown browns02 at mcrcr0.med.nyu.edu
Tue May 6 13:50:42 EST 1997

I want to use FINDPATTERNS to look for PROSITE conserved 
amino acid patterns in the EST database.  Is there some program
that is equivalent to the EGCG TProfileSearch?

We tried creating a reverse translation of the amino acid pattern,
but with the mutliple codons, this rapidly becomes unworkable.

Stuart M. Brown, Molecular Biology Consultant 
NYU-MC Research Computing Resource, Dept. of Cell Biology
550 First Ave, New York, NY 10016
Phone: (212)263-7689  FAX: (212)263-8139

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