I want to use FINDPATTERNS to look for PROSITE conserved
amino acid patterns in the EST database. Is there some program
that is equivalent to the EGCG TProfileSearch?
We tried creating a reverse translation of the amino acid pattern,
but with the mutliple codons, this rapidly becomes unworkable.
Stuart M. Brown, Molecular Biology Consultant
NYU-MC Research Computing Resource, Dept. of Cell Biology
550 First Ave, New York, NY 10016
Phone: (212)263-7689 FAX: (212)263-8139