In article <33BA9791.3278 at charlie.cns.iit.edu>, Steven Gendel
<sgendel at charlie.cns.iit.edu> wrote:
> I have a published probe sequence that might be useful for my work. The
> published sequence has several Inosine residues. I would like to use
> something like FINDPATTERNS to compare this sequence to several genes in
> GenBank. What symbol should I use with GCG to account for the base
> "specificity" of the Inosines? My inclination is to use N. Is this a
> good idea?
I complements UCA.
The IUB/GCG code for ~G is H and according to Appendix III of
GCG 8.0 the complement of H is D.
Andrew T. Lloyd Irish National Centre for BioInformatics INCBI
atlloyd at acer.gen.tcd.iehttp://acer.gen.tcd.ie
Tel: (+353)-1-608-1969 EMBnet Ireland Fax: (+353)-679-8558