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convert PDB format to sequence

Paul Roy proy at rsvs.ulaval.ca
Tue Jan 14 14:45:12 EST 1997


On Tue, 14 Jan 1997, P. Kallblad wrote:

> I need to align sequences of proteins from PDB files with normal
sequence
> files. Does anybody know about a program that converts PDB files into
PIR
> format or into a similar sequence-only format?
>
> Thanks for any suggestions.

You can download the NRL_3D database from    ncbi.nlm.nih.gov
It is in the directory   /repository/PIR
and contains PIR-format sequence files corresponding to the PDB files with
the same names.

Paul

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 Paul H. Roy                             Phone:  +1 418 654 2705
 Departement de biochimie,FSG            FAX:    +1 418 654 2715
 Universite Laval                        E-mail: proy at rsvs.ulaval.ca
 Quebec, QC  G1K 7P4
 CANADA

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