We are trying to become less dependent on the GCG package,
especially since many PC- and Web-based programs provide parts of its
functionality and the fees/costs of maintaining GCG have not declined in
a noticable way. Our only "missing link" in making graphically enhanced
sequence alignments in the function of PRETTY - identification of similar
amino acids, as defined by a similarity matrix such as PAM250, and
labeling of the identified ones with uppercase.
Does anyone know of any stand-alone program/macro/script that
would perform this function? TIA.
Dr. Les J. Klimczak | mailto:lklimcza at sas.upenn.edu
Department of Biology | http://www.sas.upenn.edu/~lklimcza
University of Pennsylvania | Tel.: (215) 898 3673
Philadelphia, PA 19104-6018 | FAX: (215) 898 8780