AA sequence randomization?

mathog at seqaxp.bio.caltech.edu mathog at seqaxp.bio.caltech.edu
Wed Nov 6 15:38:56 EST 1996

In article <3280C38C.41C6 at ottawa.scs.uiuc.edu>, campanelli lab <campanll at ottawa.scs.uiuc.edu> writes:
>I'm looking for a program that will allow me to randomize an amino acid
>sequence in a mult. seq. alignment and then do another alignment. I want
>to get a better idea about homology. Any help would be greatly
>appreciated. You can email me direct at: sljohnsn at staff.uiuc.edu. Thanks

I have a variant of CORRUPT called PEPCORRUPT which will introduce noise
into a protein sequence (residue changes, indels0, but it doesn't retain
the composition or randomize the positions, if you want to do that, use
the SHUFFLE program instead.

Email me if you want me to send you PEPCORRUPT.


David Mathog
mathog at seqaxp.bio.caltech.edu
Manager, sequence analysis facility, biology division, Caltech 

More information about the Info-gcg mailing list

Send comments to us at biosci-help [At] net.bio.net