IUBio

stand-alone equivalent of PRETTY

Isaac John ijohn at LONDON.BIOLOGY.LSA.UMICH.EDU
Fri Nov 1 10:50:24 EST 1996


I think "DNA Star" does better than pretty. It is PC based and very simple
to use.

Isaac


On 31 Oct 1996, Les Klimczak wrote:

> 
> 	We are trying to become less dependent on the GCG package, 
> especially since many PC- and Web-based programs provide parts of its 
> functionality and the fees/costs of maintaining GCG have not declined in 
> a noticable way. Our only "missing link" in making graphically enhanced 
> sequence alignments in the function of PRETTY - identification of similar 
> amino acids, as defined by a similarity matrix such as PAM250, and 
> labeling of the identified ones with uppercase.
> 	Does anyone know of any stand-alone program/macro/script that 
> would perform this function? TIA.
> 
> 	Les Klimczak
> 
> _____________________________________________________________________
> Dr. Les J. Klimczak           |  mailto:lklimcza at sas.upenn.edu
> Department of Biology         |  http://www.sas.upenn.edu/~lklimcza
> University of Pennsylvania    |  Tel.:     (215) 898 3673
> Philadelphia, PA 19104-6018   |  FAX:      (215) 898 8780
> _____________________________________________________________________
> 
> 
> 
> 
> 




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