IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

Pileup/Consensus

caetano at FAUNA.UCDAVIS.EDU caetano at FAUNA.UCDAVIS.EDU
Wed Jun 26 16:53:30 EST 1996


Hi there!

I want to compare differnet sequences for the same gene.  I know how to align
multiple sequences with "Pileup".  The next thing I would like to do is to
somehow visualize the differences between the sequences I am comparing, in
other words, put dots where there's consensus and keep the actual bases where
there's not.  Does anybody know how to do this?  I tried using "pretty", on the
"pileup" output file, but didn't get it to work (says the pileup file is not a
GCG file..).

Any help will be appreciated.

Thanks


Alex

caetano at charly.ucdavis.edu

********************************************************************************
Alexandre R. Caetano                  |  E-mail : "CAETANO at CHARLY.UCDAVIS.EDU"
Univ. of California-Davis             | 
Dept. Animal Science                  |
*******************************************************************************           
Life: it's only a consequence of the complexity of carbon chemistry...




More information about the Info-gcg mailing list

Send comments to us at biosci-help [At] net.bio.net