Hi there!
I want to compare differnet sequences for the same gene. I know how to align
multiple sequences with "Pileup". The next thing I would like to do is to
somehow visualize the differences between the sequences I am comparing, in
other words, put dots where there's consensus and keep the actual bases where
there's not. Does anybody know how to do this? I tried using "pretty", on the
"pileup" output file, but didn't get it to work (says the pileup file is not a
GCG file..).
Any help will be appreciated.
Thanks
Alex
caetano at charly.ucdavis.edu
********************************************************************************
Alexandre R. Caetano | E-mail : "CAETANO at CHARLY.UCDAVIS.EDU"
Univ. of California-Davis |
Dept. Animal Science |
*******************************************************************************
Life: it's only a consequence of the complexity of carbon chemistry...
