How to treat sequence as circular for GAP

Danuta Bois dbois at netsrq.com
Mon Jan 29 17:09:23 EST 1996


Does anyone know whether GAP can compare circular sequences and if so,
how can I specify that they are circular? I want to compare some
sequences from Genbank and they're written as linear, though in vivo
they're circular.  The problem is, they've been opened up in different
loci, so it is hard to compare them.  I could rearrange them manually,
but that would renumber the original sequence coordinates.
I'd appreciate any help.

Danuta Bois
Gulf Coast Research & Ed.Ctr./U. of Florida
Bradenton, Florida

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