Don Gilbert (gilbertd at sunflower.bio.indiana.edu) wrote:
: If you have readseq handy, this should do the conversion you
: want:
: readseq mydata.msf -format=phylip -output=mydata.phyl -all
: or this for short
: readseq mydata.msf -f=phylip -o=mydata.phyl -a
: --
: -- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu
There is however a problem : Readseq (or at least the distribution of
1 Feb 93, maybe it has been fixed now) omits to replace "." by "-".
That is why for a long time we teached our users to edit the Readseq
output file with the vi "supervisor" command :
:1,$s/\./-/g
Horrible ! Fortunately, there is tophylip now.
Guy Bottu
