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mathog at seqaxp.bio.caltech.edu mathog at seqaxp.bio.caltech.edu
Fri Jan 5 11:27:35 EST 1996


In article <4ch1h0$c7j at synapse.bms.com>, Stanley Krystek <krystek at alcor.bms.com> writes:
>I am looking for software  to map protease digest sites.
>Can someone suggest any software or programs available that 
>provide a list of enzyme cleavage sites.
>

You mean, besides GCG's PEPTIDESORT?  

The sites that it recognizes are stored in genrundata:proenzall.dat. 
Note that this file breaks chymotrypsin (for instance) down into 3 entries,
one each for F,W,Y.  This somewhat confusingly causes chymo to show up 3
times in the enzyme selection window. 

Regards,

David Mathog
mathog at seqaxp.bio.caltech.edu
Manager, sequence analysis facility, biology division, Caltech 



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