In article <4ch1h0$c7j at synapse.bms.com>, Stanley Krystek <krystek at alcor.bms.com> writes:
>I am looking for software to map protease digest sites.
>Can someone suggest any software or programs available that
>provide a list of enzyme cleavage sites.
You mean, besides GCG's PEPTIDESORT?
The sites that it recognizes are stored in genrundata:proenzall.dat.
Note that this file breaks chymotrypsin (for instance) down into 3 entries,
one each for F,W,Y. This somewhat confusingly causes chymo to show up 3
times in the enzyme selection window.
mathog at seqaxp.bio.caltech.edu
Manager, sequence analysis facility, biology division, Caltech