IUBio

importing raw sequence files

Ewan Birney birney at molbiol.ox.ac.uk
Thu Feb 8 04:05:38 EST 1996


Chris Barry wrote:
> 
> Could someone tell me how to import a raw sequence file on GCG? Thanks
> 
> Chris

The easiest way is to make the raw sequence file a fasta (pearson)
format file


Thus if your file looks like
------------------------------------------------
aaaatgtgtattatataaahagagaaaatatatatatatata
tagagatgatagatagagagatagaataggggtgatagatagat


then simply add a >name_of_sequence in an editor
so it looks like

------------------------------------------------
>first_sequence
aaaatgtgtattatataaahagagaaaatatatatatatata
tagagatgatagatagagagatagaataggggtgatagatagat


and then use fromfasta to get it to a GCG sequence


ewan



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