IUBio

Fetch wont fetch everything

Christoph Gartmann GARTMANN at IMMUNBIO.MPG.DE
Wed Aug 14 11:59:52 EST 1996


In <3211DDB7.5D62 at bbsrc.ac.uk> Aengus writes:

> Recently I have split the EST sections of from the main
> part of GENBANK and EMBL
> 
> EMBL - everything except ESTs
> EMBLPLUS - everything and ESTs
> 
> same for GENBANK
> 
> If I now try to FETCH either using just a sequence name or
> accession number the sequence cant be found.
> 
> If the subsection is included then it will find it.
> 
> eg hs00001 is not found but est:hs00001 is!
> 
> 
> The specifications for the data libraries are held in 2 files:
> 
> gcg/gcgcore/script/gcguserspecs	for all the default data
> 				libraries and the changes
> 				as specified above.
> 
> gcg/gcgcore/siteuserspecs	all other data libraries.
> 
> 
> Any ideas?

You'll have to modify the farm-files in gcg/gcgcore/data/rundata as well.

Regards,
   Christoph Gartmann


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