On Wed, 14 Aug 1996, Aengus Stewart wrote:
> Recently I have split the EST sections of from the main
> part of GENBANK and EMBL
>> EMBL - everything except ESTs
> EMBLPLUS - everything and ESTs
>> same for GENBANK
>> If I now try to FETCH either using just a sequence name or
> accession number the sequence cant be found.
>> If the subsection is included then it will find it.
>> eg hs00001 is not found but est:hs00001 is!
I have previously seem the same sort of problem; check the files
gendata.fil and the various .farm files in GenRunData; also the .header
files in GCGGenBank and GCGEMBL
If you make local modifications in these files, don't forget that they may
be overwritten during database updates using GCG's CD-ROM's.
Perhaps you are using EMBL as a primary database? GCG made the same kind
of splitting off of EST's in a previous release for those using GCG's
database updates.
******************************************************************************
Paul H. Roy Phone: +1 418 654 2705
Departement de biochimie,FSG FAX: +1 418 654 2715
Universite Laval E-mail: proy at rsvs.ulaval.ca
Quebec, QC G1K 7P4
CANADA
******************************************************************************
On Wed, 14 Aug 1996, Aengus Stewart wrote:
> Recently I have split the EST sections of from the main
> part of GENBANK and EMBL
>> EMBL - everything except ESTs
> EMBLPLUS - everything and ESTs
>> same for GENBANK
>> If I now try to FETCH either using just a sequence name or
> accession number the sequence cant be found.
>> If the subsection is included then it will find it.
>> eg hs00001 is not found but est:hs00001 is!
>>> The specifications for the data libraries are held in 2 files:
>> gcg/gcgcore/script/gcguserspecs for all the default data
> libraries and the changes
> as specified above.
>> gcg/gcgcore/siteuserspecs all other data libraries.
>>> Any ideas?
>> I have a sneaking suspicion that this is sitting right in front
> of me and I cant see it.
>>> Aengus
>>>> -----------------------------------------------------------
> Aengus Stewart aengus.stewart at bbsrc.ac.uk> Computing Centre
> Biotechnology and Biological Sciences Research Council
> Harpenden, Herts, AL5 2JE, UK.
> -----------------------------------------------------------
>>
