In article <Pine.PMDF.3.91.960802164432.847288195A-100000 at TIGER.UOFS.EDU> chengs1 at TIGER.UOFS.EDU writes:
> I was working on two sequences which are supposed to coding DNA-binding
> protein. So I tried to look for helix-turn-helix motif in those two ORFs.
> Is there any way to do it?
There is a program HELIXTURNHELIX in the EGCG extensions to GCG which does
exactly this.
EGCG 8.1 is available from ftp.sanger.ac.uk in directory pub/pmr/egcg81
and requires GCG 8.1.
More information on EGCG is available from http://www.sanger.ac.uk/egcg/
--
------------------------------------------------------------------------
Peter Rice | Informatics Division,
E-mail: pmr at sanger.ac.uk | The Sanger Centre,
Tel: (44) 1223 494967 | Wellcome Trust Genome Campus,
Fax: (44) 1223 494919 | Hinxton, Cambs, CB10 1SA,
URL: http://www.sanger.ac.uk/~pmr/ | England
