Helix-turn-Helix motif?

Peter Rice pmr at sanger.ac.uk
Thu Aug 8 03:59:22 EST 1996

In article <Pine.PMDF.3.91.960802164432.847288195A-100000 at TIGER.UOFS.EDU> chengs1 at TIGER.UOFS.EDU writes:
   > I was working on two sequences which are supposed to coding DNA-binding 
   > protein. So I tried to look for helix-turn-helix motif in those two ORFs. 
   > Is there any way to do it?

There is a program HELIXTURNHELIX in the EGCG extensions to GCG which does
exactly this.

EGCG 8.1 is available from ftp.sanger.ac.uk in directory pub/pmr/egcg81
and requires GCG 8.1.

More information on EGCG is available from http://www.sanger.ac.uk/egcg/

Peter Rice                           | Informatics Division,
E-mail: pmr at sanger.ac.uk             | The Sanger Centre,
Tel: (44) 1223 494967                | Wellcome Trust Genome Campus,
Fax: (44) 1223 494919                | Hinxton, Cambs, CB10 1SA,
URL: http://www.sanger.ac.uk/~pmr/   | England

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