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From: duhaimj at IRCM.UMontreal.CA ("SI-Johanne Duhaime")
Newsgroups: bionet.software.gcg
Subject: How to talk homology with pileup
Date: 7 Nov 1995 13:07:45 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Message-ID: <951107160416.ZM7663 at si05.IRCM.UMontreal.CA>
Good afternoon,
I have a question that is often asked by researchers of our site.
Let's say that you do a pileup with a set of sequences. How to talk
homology with the result? Let me make that clearer. With the program gap
you can say: in that segment of the two sequences you have xx% of
similarity. But with pileup you do not have such a result. You can use
Plotsimilary to have an idea of the similarity but it is a graphical
output.
Do you have any suggestion on that. When you publish how do you point
out the similarity?
Thank you very much for your help.
--
Johanne Duhaime
IRCM
Duhaimj at ircm.umontreal.ca
