RNA folding

Frederic PLEWNIAK plewniak at igbmc.u-strasbg.fr
Wed Nov 22 08:35:15 EST 1995

In article <frank.4.30B20853 at moon.ovi.ac.za> Frank Vreede,
frank at moon.ovi.ac.za writes:
>I have been using GCG version 8.0 to do squiggles plots of RNA up to
>bases in length. However, I would like to fold RNA of up to 4 kb in
>Does anybody know of software that can handle this, or any other 
>suggestions for tackling the problem. I expect the 5' and 3' ends to
form a 
You (or your local GCG manager) may, for a start, try to rebuild the
mfold application 
with the following modification in the include file mfoldblock.inc :

        parameter (maxn =1400, fldmax=2*maxn)

(that is line 15) changed into :

        parameter (maxn = 4000, fldmax=2*maxn)

if your machine can bear this.....

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