Thank you for all the people that answered my question about "how to talk
homology with pileup". Every body suggested me to use the program
Distances. This give an idea about the homology between each two sets of
sequences of the alignment.
But what I am interessed in is to measure for each position of an alignment
a kind of score of homology. If I have 20 aligned sequences where are the
highlycon served regions and how much are they homologues? This is more or
less the result of plotsimilary but in ascii terms.
Is this sound correct for "to talk homology". And is there any program
doing that?
Thank you again
Johanne Duhaime
IRCM
Duhaimj at ircm.umontreal.ca
