how to talk homology: part 2

SI-Johanne Duhaime duhaimj at IRCM.UMontreal.CA
Fri Nov 10 16:16:18 EST 1995

Thank you for all the people that answered my question about "how to talk 
homology with pileup".  Every body suggested me to use the program 
Distances. This give an idea about the homology between each two sets of 
sequences of the alignment. 
But what I am interessed in is to measure for each position of an alignment 
a kind of score of homology. If I have 20 aligned sequences where are the 
highlycon served regions and how much are they homologues?  This is more or 
less the result of plotsimilary but in ascii terms.   
Is this sound correct for "to talk homology". And is there any program 
doing that?

Thank you again

Johanne Duhaime
Duhaimj at ircm.umontreal.ca

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