duhaimj at IRCM.UMontreal.CA ("SI-Johanne Duhaime") writes:
>similarity. But with pileup you do not have such a result. You can use
>Plotsimilary to have an idea of the similarity but it is a graphical
>output.
>Do you have any suggestion on that. When you publish how do you point
>out the similarity?
In the current EGCG package is a program called "homologies". This program
can calculated distances AS WELL AS similarities. Use the "-precent" option
to calculate the percentage homology between set set of aligned sequences.
Best regards,
Jack
--
Dr. Jack A.M. Leunissen. | CAOS/CAMM Center, Univ. of Nijmegen
Email: jackl at caos.kun.nl | Toernooiveld
Tel. : +31 24 365 22 48 | 6525 ED Nijmegen, The Netherlands
Fax : +31 24 365 29 77 | URL=http://www.caos.kun.nl/
