How to talk homology with pileup

Jack Leunissen jackl at caos.kun.nl
Thu Nov 9 08:14:20 EST 1995

duhaimj at IRCM.UMontreal.CA ("SI-Johanne Duhaime") writes:

>similarity. But with pileup you do not have such a result.  You can use 
>Plotsimilary to have an idea of the similarity but it is a graphical 
>Do you have any suggestion on that. When you publish how do you point 
>out the similarity?

In the current EGCG package is a program called "homologies". This program
can calculated distances AS WELL AS similarities. Use the "-precent" option
to calculate the percentage homology between set set of aligned sequences.

Best regards,
      Dr. Jack A.M. Leunissen. | CAOS/CAMM Center, Univ. of Nijmegen
      Email: jackl at caos.kun.nl | Toernooiveld
      Tel. : +31 24 365 22 48  | 6525 ED Nijmegen, The Netherlands
      Fax  : +31 24 365 29 77  | URL=http://www.caos.kun.nl/

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