duhaimj at IRCM.UMontreal.CA ("SI-Johanne Duhaime") wrote:
|Let's say that you do a pileup with a set of sequences. How to talk
|homology with the result? Let me make that clearer. With the program gap
|you can say: in that segment of the two sequences you have xx% of
|similarity. But with pileup you do not have such a result. You can use
|Plotsimilary to have an idea of the similarity but it is a graphical
|output.
|Do you have any suggestion on that. When you publish how do you point
|out the similarity?
The program you might want to look at is "distances" which writes a table
of the pairwise distances between aligned sequenses. If you are running
Version 8, try also the "olddistances" program.
Akemi Yagi
yagi2 at scripps.edu
