Xiao-Ru.Wang (Xiao-Ru.Wang at genfys.slu.se) wrote:
: Hi GCG users,
: I have retrieved 5 DNA sequences from GenBank and would like to aligne them
: with the GCG PileUp. Could anyone enlighten me at how to prepare the input
: file to run PileUP? Thank you very much!
: Xiao-Ru Wang
Dear Xiao:
Follow these stepes:
1- Reformat your sequence to GCG format
Use the command reformat. If you do not know how to do that,
check genhelp reformat.
2. Write a file with the name of your sequences in GCG format.
For example, if you have sequence a, b, and c; write a file
like that:
a.seq
b.seq
c.seq
3. Suppose the name of the above file is mysequences. Type:
pileup @mysequences
That's it. E-mail me if you have any question.
Vitor
:xiao-ru.wang at genfys.slu.se--
______________________________________________________________________
Vitor Warwar / 406 Plant Sciences Hall / University of Nebraska
Lincoln NE 68593-0722 / USA / vwarwar at unlinfo.unl.edu
_______________________________________________________________________
