(no subject)

[Klaus Salger]

Matthew Frosch (frosch at dsg.harvard.edu) wrote:
: Does anyone know of programs (GCG or otherwise) which are useful in 
: determining potential membrane spanning regions based on primary 
: sequence data?
: I have a cloned protein which is probably a membrane protein based on 
: sequence homology with other proteins.  I would like to define the 
: membrane spanning domain based on the sequence I have (not just by 
: homology with other members of the class).  
: Thanks in advance for any guidance.

: Matthew Frosch
: Pathology, Brigham and Women's Hospital
: frosch at dsg.harvard.edu

You could try the following URLs to analyze your sequence via WWW:
http://www.embl-heidelberg.de/predictprotein/predictprotein.html
http://www.embl-heidelberg.de/tmap/tmap_info.html

Cheers
  Klaus

--
Klaus Salger                phone : ++49 (0)89 5902 -502
Zoologisches Institut       FAX   :                 -450
AG MacWilliams              e-mail: salger at zi.biologie.uni-muenchen.de
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