blast search difficulty!

Cornelius Krasel krasel at wpxx02.toxi.uni-wuerzburg.de
Thu Dec 21 16:48:19 EST 1995

Namjin Chung (chung006 at MC.DUKE.EDU) wrote:
> Dear GCG users,
> I have difficulty in using blast search in GCG program.  That is...
> %blast -infile1=myfile -infile2=nr -outfile=myfile.blastp
> in the above example, if I put nr (for which I mean non-redundant
> protein databases) for 
> infile2, it always prompts me to choose between nr's for protein
> and nucleic acid databases.

I have not tried this, but according to the online help, the additional
command line qualifiers
should be able to circumvent this problem.


/* Cornelius Krasel, U Wuerzburg, Dept. of Pharmacology, Versbacher Str. 9 */
/* D-97078 Wuerzburg, Germany   email: phak004 at rzbox.uni-wuerzburg.de  SP3 */
/* "Science is the game we play with God to find out what His rules are."  */

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