Namjin Chung (chung006 at MC.DUKE.EDU) wrote:
> Dear GCG users,
> I have difficulty in using blast search in GCG program. That is...
>> %blast -infile1=myfile -infile2=nr -outfile=myfile.blastp
>> in the above example, if I put nr (for which I mean non-redundant
> protein databases) for
> infile2, it always prompts me to choose between nr's for protein
> and nucleic acid databases.
I have not tried this, but according to the online help, the additional
command line qualifiers
-DBNucleotideonly
-DBProteinonly
should be able to circumvent this problem.
--Cornelius.
--
/* Cornelius Krasel, U Wuerzburg, Dept. of Pharmacology, Versbacher Str. 9 */
/* D-97078 Wuerzburg, Germany email: phak004 at rzbox.uni-wuerzburg.de SP3 */
/* "Science is the game we play with God to find out what His rules are." */
