IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

How can one keep TFD-Sites up-to-date ?

Christoph Gartmann GARTMANN at IMMUNBIO.MPG.DE
Sun Aug 6 09:17:02 EST 1995


In <3vstk0$mlv at rc1.vub.ac.be> gbottu at ben.vub.ac.be writes:

> The GCG distribution contains the file tfsites.dat with the TFD-Sites
> databank in GCG patterns file format. We would like to offer to our users
> the latest version of the TFD-Sites databank. Unfortunately, the file
> sites.dat that can be obtained from the NCBI anonymous ftp server is
> not in GCG format. Does anyone know about a place where one can get
> the TFD-Sites in GCG format or about a software tool that performs the
> format conversion ?

I wrote a littel PASCAL program to extract patterns from SITES.DAT using
FACTORS.DAT to specify specific organisms. You enter the organism and the
program will create a GCG pattern file. Currently the program is a bit
VMS-specific but it shoudln't be a big deal to modify it.

Regards,
   Christoph Gartmann


+----------------------------------------------------------------------------+
| Max-Planck-Institut fuer      Phone   : +49-761-5108-465   Fax: -221       |
| Immunbiologie                 PSI     : PSI%(0262)45050160374::GARTMANN    |
| Postfach 1169                 Internet: gartmann at immunbio.mpg.de           |
| D-79011  Freiburg, FRG                                                     |
+----------- Do you know MENUE, the user environment for OpenVMS? -----------+



More information about the Info-gcg mailing list

Send comments to us at biosci-help [At] net.bio.net