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picture in pileup

bochet at bobby bochet at bobby
Thu Sep 1 14:55:03 EST 1994


Hello faithfull GCG users
When I run PILEUP (on VMS) and when it does not produce the alignmemt because
it has to introduce "too many gaps", the picture of the tree is lost as well.
In my understanding of the algorithm, this picture is produced just after the
pairwise comparisons, that is before the proper alignment starts. Does anybody 
know of a way to keep this picture even when the alignment fails?
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