IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

Pileup problem with long sequences

Julie Knott jknott at MOLBIO.CBS.UMN.EDU
Wed Nov 16 20:32:39 EST 1994


 
Jay,

PileUp's maximum sequence length is 5kb.  I don't know if it can be 
changed.  It's a lousy parameter, as I have 10-20kb I'd like to see too.  
Please let me know if you find a better way.  I'll be watching the net -- 
does anyone know a better way?

Julie
jknott at molbio.cbs.umn.edu

On 16 Nov 1994 jcalvert at crcvms.unl.edu wrote:

> What's the most likely cause of the "alignment may not
> be optimal" message during a pileup alignment of several
> long sequences? The resulting output is clearly not the 
> best alignment. Is this a memory problem? What parameter
> needs to be increased?
> 
> Thanks in advance for helpful suggestions from anyone.
> 
> Jay Calvert     jcalvert at crcvms.unl.edu
> 
> 
> 



More information about the Info-gcg mailing list

Send comments to us at biosci-help [At] net.bio.net