G'Day
GCG provides a number of profiles for use with the PROFILESEARCH and
PROFILESCAN programs. These profiles have been created by the
PROFILEMAKE program, as reflected in the header of KINASE.PRF which
is reproduced below.
My question is - Does anybody know what are the sequences and database
entry numbers of the seven sequences that have been
used to construct this profile?
> (Peptide) PROFILEMAKE v4.00 of: @kin.fil Length: 310 Sequences: 7
> MaxScore: 193.70 22-JUL-1988 15:49
>> Gap: 1.00 Len: 1.00
> GapRatio: 0.33 LenRatio: 0.10
>> okbog.frg From: 1 To: 310 Weight: 1.00
> okbo2c.frg From: 1 To: 310 Weight: 1.00
> kiboc.frg From: 1 To: 310 Weight: 1.00
> tvhuf6.frg From: 1 To: 310 Weight: 1.00
> tvhums.frg From: 1 To: 310 Weight: 1.00
> a24169.frg From: 1 To: 310 Weight: 1.00
> a24673.frg From: 1 To: 310 Weight: 1.00
>> Symbol comparison table: ProfilePep.cmp FileCheck: 975
I was unable to find any reference to the seven fragments, either online or
in the GCG documentation. If it is there, and I missed it, then naturally
I apologize - perhaps I should clean my glasses more often.
Any help will be greatly appreciated.
Regards
Robert Flegg
--
Robert Flegg |=| email: robert at wehi.edu.au
Database Liaison Officer |=| flegg at ludwig.edu.au
ANSAF @ WEHI/LICR/CSIRO/BRI |=| phone: (+61-3) 345-2618
