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Profile - kinase.prf sequences?

Robert Flegg robert at wehi.edu.au
Tue Nov 8 23:32:25 EST 1994


G'Day


GCG provides a number of profiles for use with the PROFILESEARCH and 
PROFILESCAN programs.  These profiles have been created by the 
PROFILEMAKE program, as reflected in the header of KINASE.PRF which 
is reproduced below.

My question is - Does anybody know what are the sequences and database 
                 entry numbers of the seven sequences that have been 
                 used to construct this profile?

> (Peptide) PROFILEMAKE v4.00 of: @kin.fil  Length: 310  Sequences: 7
>   MaxScore: 193.70  22-JUL-1988 15:49
> 
>                           Gap: 1.00              Len: 1.00 
>                      GapRatio: 0.33         LenRatio: 0.10
> 
>                           okbog.frg  From: 1     To: 310     Weight: 1.00
>                          okbo2c.frg  From: 1     To: 310     Weight: 1.00
>                           kiboc.frg  From: 1     To: 310     Weight: 1.00
>                          tvhuf6.frg  From: 1     To: 310     Weight: 1.00
>                          tvhums.frg  From: 1     To: 310     Weight: 1.00
>                          a24169.frg  From: 1     To: 310     Weight: 1.00
>                          a24673.frg  From: 1     To: 310     Weight: 1.00
> 
> Symbol comparison table: ProfilePep.cmp  FileCheck: 975

I was unable to find any reference to the seven fragments, either online or 
in the GCG documentation.  If it is there, and I missed it, then naturally 
I apologize - perhaps I should clean my glasses more often.

Any help will be greatly appreciated.

Regards

Robert Flegg

-- 
Robert Flegg                 |=|  email: robert at wehi.edu.au
Database Liaison Officer     |=|         flegg at ludwig.edu.au
ANSAF @ WEHI/LICR/CSIRO/BRI  |=|  phone: (+61-3) 345-2618



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