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AA 3 letter to 1 letter code

John Edward Hill HILLJ01 at MCRCR6.MED.NYU.EDU
Fri Nov 4 08:46:14 EST 1994


The REFORMAT command in GCG has the following option:

 /THReeintoone             translates three-letter peptides into one-letter

That should do it!

Best,
John
___________________________________________________________________________
John Edward Hill, Ph.D.              |  Department of Cell Biology             
Internet: hillj01 at mcrcr.med.nyu.edu  |  New York University Medical Center
  EARN/Bitnet: HILL at NYUMED.BITNET    |  550 First Avenue                  
212-263-7135    FAX: 212-263-8139    |  New York, New York  10016
___________________________________________________________________________

On Fri, 4 Nov 1994, Christoph Weber wrote:

> Hi all,
>  
> I have to pull out sequences from PDB files and get them into GCG format.
>  
> In the PDB files the three letter code is used, while GCG only accepts
> one letter codes.
> I poked around in the help files for a utility to translate between the
> two representations, but haven't found anything.
> In NBRL3D, I found about half of my sequences and successfully downloaded them
> in a GCG readable format, but it's the ones not in NBRL3D (yet) that bug me.
>  
> Does anyone out there know how to go about this?
>  
> Thanks in advance,
> Christoph
> --
> Christoph Weber                     email: cweber at oci.unizh.ch
> OCI  Uni Zurich                     phone: +41 1 257 4925
> Winterthurerstr. 190                FAX:   +41 1 361 9895
> CH-8057 Zurich,  Switzerland
>  
> 



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