In article <1994May25.103412.1 at omrf.uokhsc.edu>, frank at omrf.uokhsc.edu writes:
|> We have aligned two groups of sequences with a short overlap using
|> the fragmetn assembly software. The total consensus length is about
|> 500 bp. The second group of sequences is offset about 300 bp from
|> position 1.
|>|> Now we would like to get a printout with identical nucleotides to
|> the consensus shown as a "-" and differences as the actual base.
|> We have tried to use pileup but it gives a completely different
|> and very poor alignment. Can you make a data file for the program
|> PRETTY that includes offset information for each sequence? Are
|> there alternate strategies to see these differences?
|>|> Thanks,
|> Bart Frank
|>
What you want exists as part of the EGCG package distributed
by GCG in their tapes and CDROMs. The program is called GelPicture
and will generate a file which displays the alignment and consensus
for each contig in a FAS project.
R:)
--
***************************************************************************
* RODRIGO LOPEZ SERRANO rodrigol at biotek.uio.no *
* Norwegian EMBnet node Tel:xx-47-22958756 Fax:xx-47-22694130 *
* gopher= biomaster.uio.no 70 WWW= http://biomaster.uio.no/ *
***************************************************************************
